ZNF346

Protein-coding gene in the species Homo sapiens
ZNF346
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

2MKD, 2MKN

Identifiers
AliasesZNF346, JAZ, Zfp346, zinc finger protein 346
External IDsOMIM: 605308 MGI: 1349417 HomoloGene: 8073 GeneCards: ZNF346
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for ZNF346
Genomic location for ZNF346
Band5q35.2Start177,022,696 bp[1]
End177,081,189 bp[1]
Gene location (Mouse)
Chromosome 13 (mouse)
Chr.Chromosome 13 (mouse)[2]
Chromosome 13 (mouse)
Genomic location for ZNF346
Genomic location for ZNF346
Band13|13 B1Start55,105,311 bp[2]
End55,134,825 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • pancreatic ductal cell

  • sural nerve

  • ganglionic eminence

  • Achilles tendon

  • tibialis anterior muscle

  • prefrontal cortex

  • oocyte

  • left lobe of thyroid gland

  • smooth muscle tissue

  • blood
Top expressed in
  • spermatocyte

  • extraocular muscle

  • superior frontal gyrus

  • thymus

  • cerebellar cortex

  • adrenal gland

  • right ventricle

  • seminiferous tubule

  • temporal muscle

  • thoracic diaphragm
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • enzyme binding
  • double-stranded RNA binding
  • zinc ion binding
  • p53 binding
  • protein binding
  • metal ion binding
  • nucleic acid binding
  • RNA binding
  • miRNA binding
Cellular component
  • cytoplasm
  • nucleolus
  • nucleus
Biological process
  • intrinsic apoptotic signaling pathway by p53 class mediator
  • positive regulation of apoptotic process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

23567

26919

Ensembl

ENSG00000113761

ENSMUSG00000021481

UniProt

Q9UL40

Q9R0B7

RefSeq (mRNA)
NM_001308213
NM_001308214
NM_001308215
NM_001308216
NM_001308218

NM_001308219
NM_001308221
NM_001308223
NM_012279
NM_001363713

NM_012017

RefSeq (protein)
NP_001295142
NP_001295143
NP_001295144
NP_001295145
NP_001295147

NP_001295148
NP_001295150
NP_001295152
NP_036411
NP_001350642

NP_036147
NP_001365863
NP_001365864

Location (UCSC)Chr 5: 177.02 – 177.08 MbChr 13: 55.11 – 55.13 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Zinc finger protein 346 is a protein that in humans is encoded by the ZNF346 gene.[5][6]

The protein encoded by this gene is a nucleolar, zinc finger protein that preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids, rather than DNA alone. Mutational studies indicate that the zinc finger domains are not only essential for dsRNA binding, but are also required for its nucleolar localization. The encoded protein may be involved in cell growth and survival.[6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000113761 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000021481 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Yang M, May WS, Ito T (Nov 1999). "JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization". J Biol Chem. 274 (39): 27399–406. doi:10.1074/jbc.274.39.27399. PMID 10488071.
  6. ^ a b "Entrez Gene: ZNF346 zinc finger protein 346".

Further reading

  • Hartley JL, Temple GF, Brasch MA (2001). "DNA cloning using in vitro site-specific recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC 310948. PMID 11076863.
  • Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Chen T, Brownawell AM, Macara IG (2004). "Nucleocytoplasmic shuttling of JAZ, a new cargo protein for exportin-5". Mol. Cell. Biol. 24 (15): 6608–19. doi:10.1128/MCB.24.15.6608-6619.2004. PMC 444848. PMID 15254228.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Wiemann S, Arlt D, Huber W, et al. (2004). "From ORFeome to biology: a functional genomics pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC 528930. PMID 15489336.
  • Mehrle A, Rosenfelder H, Schupp I, et al. (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC 1347501. PMID 16381901.

External links

This article incorporates text from the United States National Library of Medicine, which is in the public domain.


  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies


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